Hooks, LSP ignore session cwd

“When a session is started with --project-config-root <dir>, plugin LSP servers run with their working directory (and CLAUDE_PROJECT_DIR) set to <dir>.”

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I hit this bug: rapsheet.dev/sheets/claude-code/issues/566/file
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Hooks and LSP servers start in config root, not session cwd. With --project-config-root in desktop worktree sessions, plugin LSP servers and command hooks run in the main checkout while Claude works in the worktree.

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File my report

Where: hooks and LSP servers
Versions: 2.1.284 to 2.1.286
Platforms: macOS, Windows
How bad: Breaks a normal workflow.

Original reports2, newest first

Oct 2, 2026With --project-config-root (desktop worktree sessions), hook processes start in the config root, not the session cwd#99012
Sep 30, 2026--project-config-root makes plugin LSP servers run in the config root instead of the session cwd (desktop worktree sessions)#98538

Hooks, LSP ignore session cwd

Is this your bug? What gets counted gets fixed. Pile on.

Is this your bug?

Original reports2, newest first

Do you work on Claude Code?